Uses of Class
jebl.evolution.trees.TreeBuilderFactory.DistanceModel
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Packages that use TreeBuilderFactory.DistanceModel Package Description jebl.evolution.align Provides classes and interfaces for pairwise alignment of two sequences.jebl.evolution.trees -
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Uses of TreeBuilderFactory.DistanceModel in jebl.evolution.align
Methods in jebl.evolution.align that return TreeBuilderFactory.DistanceModel Modifier and Type Method Description static TreeBuilderFactory.DistanceModel
SequenceAlignmentsDistanceMatrix. getDefaultDistanceModel(java.util.List<Sequence> seqs)
Methods in jebl.evolution.align with parameters of type TreeBuilderFactory.DistanceModel Modifier and Type Method Description static AlignmentTreeBuilderFactory.Result
AlignmentTreeBuilderFactory. build(java.util.List<Sequence> seqs, TreeBuilderFactory.Method method, PairwiseAligner aligner, ProgressListener progressListener, TreeBuilderFactory.DistanceModel model)
static AlignmentTreeBuilderFactory.Result
AlignmentTreeBuilderFactory. build(Alignment alignment, TreeBuilderFactory.Method method, TreeBuilderFactory.DistanceModel model, ProgressListener progressListener)
static AlignmentTreeBuilderFactory.Result
AlignmentTreeBuilderFactory. build(Alignment alignment, TreeBuilderFactory.Method method, TreeBuilderFactory.DistanceModel model, ProgressListener progressListener, boolean useTwiceMaximumDistanceWhenPairwiseDistanceNotCalculatable)
Constructors in jebl.evolution.align with parameters of type TreeBuilderFactory.DistanceModel Constructor Description SequenceAlignmentsDistanceMatrix(java.util.List<Sequence> seqs, PairwiseAligner aligner, ProgressListener progress, TreeBuilderFactory.DistanceModel model)
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Uses of TreeBuilderFactory.DistanceModel in jebl.evolution.trees
Methods in jebl.evolution.trees that return TreeBuilderFactory.DistanceModel Modifier and Type Method Description static TreeBuilderFactory.DistanceModel
TreeBuilderFactory.DistanceModel. valueOf(java.lang.String name)
Returns the enum constant of this type with the specified name.static TreeBuilderFactory.DistanceModel[]
TreeBuilderFactory.DistanceModel. values()
Returns an array containing the constants of this enum type, in the order they are declared.
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