Uses of Interface
jebl.evolution.graphs.Edge
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Packages that use Edge Package Description jebl.evolution.graphs jebl.evolution.trees -
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Uses of Edge in jebl.evolution.graphs
Methods in jebl.evolution.graphs that return Edge Modifier and Type Method Description Edge
Graph. getEdge(Node node1, Node node2)
Returns the Edge that connects these two nodesMethods in jebl.evolution.graphs that return types with arguments of type Edge Modifier and Type Method Description java.util.Set<Edge>
Graph. getEdges()
java.util.List<Edge>
Graph. getEdges(Node node)
Returns a list of edges connected to this nodeMethods in jebl.evolution.graphs with parameters of type Edge Modifier and Type Method Description Node[]
Graph. getNodes(Edge edge)
Returns an array of 2 nodes which are the nodes at either end of the edge. -
Uses of Edge in jebl.evolution.trees
Classes in jebl.evolution.trees that implement Edge Modifier and Type Class Description class
BaseEdge
Common implementation of Attributable interface used by Nodes.Methods in jebl.evolution.trees that return Edge Modifier and Type Method Description Edge
CompactRootedTree. getEdge(Node node1, Node node2)
Edge
FilteredRootedTree. getEdge(Node node1, Node node2)
Edge
MutableRootedTree. getEdge(Node node1, Node node2)
Returns the Edge that connects these two nodesEdge
RootedFromUnrooted. getEdge(Node node1, Node node2)
Edge
RootedSubtree. getEdge(Node node1, Node node2)
Returns the Edge that connects these two nodesEdge
SimpleRootedTree. getEdge(Node node1, Node node2)
Returns the Edge that connects these two nodesEdge
SimpleTree. getEdge(Node node1, Node node2)
Returns the Edge that connects these two nodesEdge
CompactRootedTree. getParentEdge(Node node)
Edge
MutableRootedTree. getParentEdge(Node node)
Edge
RootedSubtree. getParentEdge(Node node)
Edge
SimpleRootedTree. getParentEdge(Node node)
Methods in jebl.evolution.trees that return types with arguments of type Edge Modifier and Type Method Description java.util.Set<Edge>
CompactRootedTree. getEdges()
java.util.List<Edge>
CompactRootedTree. getEdges(Node node)
java.util.Set<Edge>
FilteredRootedTree. getEdges()
java.util.List<Edge>
FilteredRootedTree. getEdges(Node node)
java.util.Set<Edge>
MutableRootedTree. getEdges()
java.util.List<Edge>
MutableRootedTree. getEdges(Node node)
Returns a list of edges connected to this nodejava.util.Set<Edge>
RootedFromUnrooted. getEdges()
java.util.List<Edge>
RootedFromUnrooted. getEdges(Node node)
Returns a list of edges connected to this nodejava.util.Set<Edge>
RootedSubtree. getEdges()
java.util.List<Edge>
RootedSubtree. getEdges(Node node)
Returns a list of edges connected to this nodejava.util.Set<Edge>
SimpleRootedTree. getEdges()
java.util.List<Edge>
SimpleRootedTree. getEdges(Node node)
Returns a list of edges connected to this nodejava.util.Set<Edge>
SimpleTree. getEdges()
java.util.List<Edge>
SimpleTree. getEdges(Node node)
Returns a list of edges connected to this nodejava.util.Set<Edge>
CompactRootedTree. getExternalEdges()
java.util.Set<Edge>
FilteredRootedTree. getExternalEdges()
java.util.Set<Edge>
MutableRootedTree. getExternalEdges()
The set of external edges.java.util.Set<Edge>
RootedFromUnrooted. getExternalEdges()
The set of external edges.java.util.Set<Edge>
RootedSubtree. getExternalEdges()
The set of external edges.java.util.Set<Edge>
SimpleRootedTree. getExternalEdges()
The set of external edges.java.util.Set<Edge>
SimpleTree. getExternalEdges()
The set of external edges.java.util.Set<Edge>
Tree. getExternalEdges()
java.util.Set<Edge>
CompactRootedTree. getInternalEdges()
java.util.Set<Edge>
FilteredRootedTree. getInternalEdges()
java.util.Set<Edge>
MutableRootedTree. getInternalEdges()
The set of internal edges.java.util.Set<Edge>
RootedFromUnrooted. getInternalEdges()
The set of internal edges.java.util.Set<Edge>
RootedSubtree. getInternalEdges()
The set of internal edges.java.util.Set<Edge>
SimpleRootedTree. getInternalEdges()
The set of internal edges.java.util.Set<Edge>
SimpleTree. getInternalEdges()
The set of internal edges.java.util.Set<Edge>
Tree. getInternalEdges()
Methods in jebl.evolution.trees with parameters of type Edge Modifier and Type Method Description Node
SimpleRootedTree. addNode(Edge edge)
Adds a new node at the midpoint of the given edgeNode[]
CompactRootedTree. getNodes(Edge edge)
Node[]
FilteredRootedTree. getNodes(Edge edge)
Node[]
MutableRootedTree. getNodes(Edge edge)
Returns an array of 2 nodes which are the nodes at either end of the edge.Node[]
RootedFromUnrooted. getNodes(Edge edge)
Node[]
RootedSubtree. getNodes(Edge edge)
Returns an array of 2 nodes which are the nodes at either end of the edge.Node[]
SimpleRootedTree. getNodes(Edge edge)
Returns an array of 2 nodes which are the nodes at either end of the edge.Node[]
SimpleTree. getNodes(Edge edge)
Returns an array of 2 nodes which are the nodes at either end of the edge.static void
SplitUtils. getSplit(java.util.List<Taxon> taxa, Tree tree, Edge edge, boolean[] split)
get split for branch associated with internal nodeboolean
SimpleTree. isExternal(Edge edge)
void
SimpleTree. setEdgeLength(Edge edge, double length)
Change length of an existing edge.
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